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Table 5 Parameters used for generating embedding for each GCN evaluated

From: Juxtapose: a gene-embedding approach for comparing co-expression networks

 

Synthetic Networks

Heart and Brain Networks

Prefrontal Cortex Networks

walk_per_node

1000

1000

1000

walk_length

20

50

30

n_iter

1

1

1

n_workers

20

20

10

embd_dim

30

150

150

window

2

2

2

min_count

2

2

2

negatives

5

15

50

alpha

0.0025

0.0025

0.0025

min_alpha

0.001

0.001

0.001

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BMC Bioinformatics

ISSN: 1471-2105

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