Table 5 Assembly results compared with the ground truth
From: Instance-based error correction for short reads of disease-associated genes
| Â | g1 | g3 | g4 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | NO. | Lar. | N50 | NO. | Lar. | N50 | NO. | Lar. | N50 |
Single-end reads | |||||||||
Truth | 6 | 24854 | 11363 | 3 | 27822 | 27822 | 3 | 187434 | 187434 |
Raw | − 1 | 3170 | − 1316 | 0 | 50 | 13879 | − 2 | 37224 | 37224 |
InsEC | 0 | 0 | 0 | 0 | 0 | 0 | 0 | − 13 | − 13 |
Coral | 2 | − 11485 | 0 | 0 | − 50 | − 13879 | 1 | 15 | 15 |
Corel_I | 4 | − 28181 | − 41672 | 1 | − 13824 | − 13824 | 0 | − 186 | − 186 |
BFC | − 1 | 3170 | − 1316 | 0 | 50 | 13879 | 0 | 34 | 34 |
BFC_I | − 2 | 0 | 0 | 0 | 50 | 50 | 0 | 34 | 34 |
Bcool | − 1 | 3198 | − 1316 | 0 | 50 | 13879 | − 2 | 52585 | 52585 |
Bcool_I | − 1 | 0 | 0 | 0 | − 6 | − 6 | − 1 | 52505 | 52505 |
Paired-end reads | |||||||||
Truth | 3 | 40458 | 40458 | 2 | 27893 | 27893 | 6 | 134849 | 134849 |
Raw | − 4 | 13097 | 27287 | 0 | 63 | 63 | − 3 | 15530 | 15530 |
InsEC | − 1 | 0 | 0 | 0 | 0 | 0 | 0 | 13 | 13 |
Coral | 0 | 0 | 0 | 0 | 91 | 91 | − 2 | 302 | 302 |
Corel_I | 2 | − 23894 | − 23894 | 1 | − 27650 | − 27650 | 2 | − 23329 | − 23329 |
BFC | 0 | 0 | 0 | 0 | 91 | 91 | − 2 | 783 | 783 |
BFC_I | − 2 | 0 | 0 | 0 | 69 | 69 | − 2 | 813 | 813 |
Bcool | 0 | 0 | 0 | 0 | 91 | 91 | − 3 | 15565 | 15565 |
Bcool_I | 0 | 63 | 63 | 0 | 63 | 63 | − 2 | 64126 | 70640 |