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Table 2 Experiment 1-Space Savings. Type 1 dataset FASTA files

From: FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy

Dataset

HS_BZIP2 (%)

HS_LZ4 (%)

HS_ZSTD (%)

HU_MFCompress (%)

HU_SPRING (%)

16G

81

55

76

85

86

32G

82

55

76

85

86

64G

82

55

76

85

87

96G

82

55

76

85

87

  1. Space savings (in percentage) and in terms of HDFS blocks, computed as specified in the main text. Files of increasing size are listed on the rows, while general-purpose and specialized compression Codecs are listed on the columns
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BMC Bioinformatics

ISSN: 1471-2105

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