Table 6 Experiment 4-File size overhead: Type 1 datasets FASTQ files: The Table Legend is as in Table 5
From: FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy
Dataset | BZIP2 | LZ4 | ZSTD | DSRC | DSRC | Fqzcomp | SPRING |
|---|---|---|---|---|---|---|---|
SA vs HS | SA vs HS | SA vs HS | SA vs HS | SA vs HU | SA vs HU | SA vs HU | |
16GB | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 4.55\%\) | \(\sim 10.53\%\) |
32GB | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 2.27\%\) | \(\sim 10.53\%\) |
64GB | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 1.12\%\) | \(\sim 16.44\%\) |
96GB | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 0\%\) | \(\sim 1.49\%\) | \(\sim 11.01\%\) |