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Table 1 Evaluation summary of assemblies using MaSuRCA contigs as input assemblies for HG001

From: SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme

  SLR-superscaffolder fragScaff Architect ARKS MaSuRCA
Number of scaffolds (> 1000 bp) 119,630 166,476 307,205 213,076 300,831
Largest scaffold (bp) 62,433,675 4,043,217 202,889 2,756,390 177,746
Total assembled length (bp) 3,345,341,888 3,672,256,418 3,038,310,109 2,908,519,565 2,907,642,015
NG50 (bp) 17,657,864 400,954 14,042 37,406 13,405
NGA50 (bp) 380,495 17,539 13,705 15,020 13,232
Relocation 11,015 92,267 3828 51,228 1648
Inversion 2939 5349 1637 5190 180
Translocation 2472 2294 903 10,828 849
Number of misassemblies 16,426 99,910 6368 67,246 4475