Table 2 Benchmarking of genomic coverage tasks using simulated reads (ICTV)
From: A multi-task CNN learning model for taxonomic assignment of human viruses
Datasets | Simulated reads (50 bp, n = 1million) from ICTV human viral genomes | Simulated reads (150 bp, n = 100 k) from ICTV human viral genomes | ||
|---|---|---|---|---|
Metrics | Kappa | F1 | Kappa | F1 |
Bowtie 2 | 0.9442 | 0.9498 | 0.9646 | 0.9646 |
MT-CNN | 0.9336 | 0.9403 | 0.9405 | 0.9465 |