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Table 2 Syntax for model construction and for the simulate function (see text for variable definitions)

From: Modern simulation utilities for genetic analysis

Simulation model in Table 1

Model construction syntax

(1)

Model = GLMTrait(\(X, \beta\), dist, link)

 

Model = GLMTrait(\(X, \beta , G, \gamma\), dist, link)

(2, 3)

Model = OrderedMultinomialTrait(\(X, \beta , \theta ,\) link)

(4)

Model = VCMTrait(\(X, \beta , vc\))

 

Model = VCMTrait(formula, df, vc)

 

Model = VCMTrait(\(X, \beta , G, \gamma , \Sigma , V\))

(5)

Model = GLMMTrait(\(X, \beta , vc\), dist, link)

Simulation model in Table 1

simulate Function syntax

(1, 3, 4, 5)

simulate(model)

(2)

simulate(model, Logistic = true, cutoff = 2)