Table 1 Assemblers included in this study
From: Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms
Assembler | Reads correction | Version used | Access |
|---|---|---|---|
Canu | \(\checkmark\) | 1.9 | github.com/marbl/canu |
Flye | \(\times\) | 2.5 | github.com/fenderglass/Flye |
NextDenovo | \(\checkmark\) | 2.2 | github.com/Nextomics/NextDenovo |
Ra | \(\times\) | 0.2.1 | github.com/lbcb-sci/ra |
Raven | \(\times\) | 0.0.7 | github.com/lbcb-sci/raven |
Shasta | \(\times\) | 0.3.0 | github.com/chanzuckerberg/shasta |
wtdbg2 | \(\times\) | 2.5 | github.com/ruanjue/wtdbg2 |