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Table 2 Improvement in overall gene recognition by adding gene models predicted by BRAKER2 and aligning protein sequences

From: FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences

Organism Number of transcript models borrowed from BRAKER Percentage of transcript models borrowed from BRAKER Improvement in average annotation score Number of transcript models from protein alignments Percentage of transcript models from protein alignments Improvement in average annotation score
Arabidopsis thaliana 1692 5 1.43 185 0.01 0.05
Oryza sativa 5662 10 0.15 440 0.01 0.15
Zea mays 1061 2 0.05 452 0.01  − 0.02
Caenorhabditis elegans 4807 18 0.48 389 0.01 0.58
Drosophila melanogaster 2421 9 0.44 481 0.02 0.22
Homo sapiens 5776 16 0.05 229 0.01 0.15
Hordeum vulgare 1065 3 0.01 19 0  − 0.57