Table 2 Improvement in overall gene recognition by adding gene models predicted by BRAKER2 and aligning protein sequences
Organism | Number of transcript models borrowed from BRAKER | Percentage of transcript models borrowed from BRAKER | Improvement in average annotation score | Number of transcript models from protein alignments | Percentage of transcript models from protein alignments | Improvement in average annotation score |
|---|---|---|---|---|---|---|
Arabidopsis thaliana | 1692 | 5 | 1.43 | 185 | 0.01 | 0.05 |
Oryza sativa | 5662 | 10 | 0.15 | 440 | 0.01 | 0.15 |
Zea mays | 1061 | 2 | 0.05 | 452 | 0.01 |  − 0.02 |
Caenorhabditis elegans | 4807 | 18 | 0.48 | 389 | 0.01 | 0.58 |
Drosophila melanogaster | 2421 | 9 | 0.44 | 481 | 0.02 | 0.22 |
Homo sapiens | 5776 | 16 | 0.05 | 229 | 0.01 | 0.15 |
Hordeum vulgare | 1065 | 3 | 0.01 | 19 | 0 |  − 0.57 |