Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources

BMC Bioinformatics

Table 1 Number of TFs, TGs and TFBS obtained from different TFBS identification algorithms for GM12878 and K562 cell lines

The “Pos ChIP-Seq” row contains TFBS identified by simply extracting the TF peaks in the cis regulatory regions around each gene, “FIMO” row contains statistically significant positional TFBS identified using the FIMO algorithm and the TEPIC row contains positional TFBS extracted based on the TEPIC affinity scores. The remaining rows contain the positional TFBS present within different regulatory elements utilized for the subsequent analyses in the paper. All the ChIP-seq data for the analysis was downloaded from the ENCODE database

ISSN: 1471-2105