scSensitiveGeneDefine: sensitive gene detection in single-cell RNA sequencing data by Shannon entropy

BMC Bioinformatics

Table 1 Basic information of single-cell data sets in this study after QC

Dataset	N.cells	M.gene	Description	Protocol	N.samples	Annotation	References
PbmcBench PBMC1	8512	1910	PBMC	10X CHROMIUM V3	2	Annotated	[18]
PbmcBench PBMC2	8669	2222	PBMC	10X CHROMIUM V3	2	Unannotated	[18]
Zheng PBMC68K	68,509	525	PBMC	10X CHROMIUM	8	Unannotated	[16]
Zhang T cells	9055	2953	Tumor-infiltrating T cells	Smart-Seq2	14	Annotated	[19]
Liao Kidney	22,052	784	Renal tubular cells	10X CHROMIUM V2	3	Unannotated	[20]
Guo Testis	6466	2575	Spermatogonial stem cells	10X CHROMIUM V2	6	Unannotated	[21]
Hemant Lung	61,431	1335	Frozen lung soft tissues	10X CHROMIUM V2	24	Unannotated	[22]
Hemant Spleen	89,082	1030	Frozen spleen soft tissues	10X CHROMIUM V2	19	Unannotated	[22]
Hemant Esophagus	103,495	2144	Frozen esophagus mucosa	10X CHROMIUM V2	23	Unannotated	[22]
Sonya Liver	8078	1147	Fresh human liver tissue	10X CHROMIUM V2	5	Unannotated	[23]
Cleber Brain	14,940	1628	Cortical organoids	10X CHROMIUM V2	4	Unannotated	[24]

ISSN: 1471-2105