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Table 5 SNVs that cannot be found in the annotation files but that actually exist

From: A tri-tuple coordinate system derived for fast and accurate analysis of the colored de Bruijn graph-based pangenomes

Position

Ref

Alt

Vartype

Involved sample

97 ~ 102

GCTGGA

-

Deletion

EF153794

449

T

C

SNP

EF397559

632

C

T

SNP

GQ895144

3213

A

G

SNP

EF153794

4658

A

G

SNP

EF153784

6101

C

T

SNP

EF153794

8290–8299

G

CCCCCTCTAG

Insertion

AP010675

13,086

C

T

SNP

EF153784

15,142

C

T

SNP

FJ493500

15,814

A

G

SNP

EF153784

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BMC Bioinformatics

ISSN: 1471-2105

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