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Table 7 Parameters of the simulation

From: A tri-tuple coordinate system derived for fast and accurate analysis of the colored de Bruijn graph-based pangenomes

Part

Experimental parameter

Para1:SNP

Para2: deletion

Para3: Insertion

Para4: k value

Set (groups*repeats)

1

SNP

100–2000 (0.6–12.0%)

10(~ 0.06%)

10(~ 0.06%)

28

20*5

2

Deletion

100(~ 0.60%)

5–100 (0.03–0.60%)

0

24

20*5

3

Insertion

100 (~ 0.60%)

0

5–100 (0.03–0.60%)

24

20*5

4

k value

500(~ 3.0%)

50(~ 0.3%)

50(~ 0.3%)

20–60

22*10