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Fig. 4 | BMC Bioinformatics

Fig. 4

From: Tamock: simulation of habitat-specific benchmark data in metagenomics

Fig. 4

Binning statistics for original and all simulated data sets without unknown sequence fractions. Contamination and completeness values, number of bins as well as tRNA and rRNA genes for all low quality (LQ), medium quality (MQ) and near-high quality (MQ*) bins from original samples, original samples with only the classified sequence fraction “orig-repl”, “simonly” as well as “simscaled” benchmarks with only simulated sequences are shown. Despite less sample diversity, the lack of rRNA genes is even more prominent in both purely simulated benchmark data sets. Figures were produced using the packages ggplot2 v3.3.0 [25], reshape2 v1.4.4 [26], gridExtra v2.3 [27] in R v3.6.3 [28]

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