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Table 3 Metrics on the human pancreas dataset

From: SSBER: removing batch effect for single-cell RNA sequencing data

 

Seurat

Harmony

SSBER

LIGER

iLISI

1.878475

1.864391

1.46051

1.8448

cLISI

1.2320

1.3623

1.0169

1.2632

ARI

0.6649

0.5393

0.8599

0.5839

ASW_batch

0.026

0.015

0.032

0.018

ASW_celltype

0.523

0.404

0.786

0.518

Isolated label

0.738

0.702

0.921

0.673

Cell cycle

0.606

0.681

0.703

0.583

HVG

0.702

 

0.747

 
  1. Bold represents the best indicator among four algorithms
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BMC Bioinformatics

ISSN: 1471-2105

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