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Table 4 Metrics on the human peripheral blood mononuclear dataset

From: SSBER: removing batch effect for single-cell RNA sequencing data

  Seurat Harmony SSBER LIGER
iLISI 1.458856 1.562768 1.578711 1.58021
cLISI 1.074385 1.065975 1.048792 1.0723
ARI 0.5720612 0.6247241 0.696191 0.61782
ASW_batch 0.064 0.096 0.056 0.089
ASW_celltype 0.348 0.329 0.387 0.319
Isolated label 0.501 0.583 0.606 0.469
Cell cycle 0.674 0.761 0.733 0.612
HVG 0.729   0.815  
  1. Bold represents the best indicator among four algorithms