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Table 4 Metrics on the human peripheral blood mononuclear dataset

From: SSBER: removing batch effect for single-cell RNA sequencing data

 

Seurat

Harmony

SSBER

LIGER

iLISI

1.458856

1.562768

1.578711

1.58021

cLISI

1.074385

1.065975

1.048792

1.0723

ARI

0.5720612

0.6247241

0.696191

0.61782

ASW_batch

0.064

0.096

0.056

0.089

ASW_celltype

0.348

0.329

0.387

0.319

Isolated label

0.501

0.583

0.606

0.469

Cell cycle

0.674

0.761

0.733

0.612

HVG

0.729

 

0.815

 
  1. Bold represents the best indicator among four algorithms