digIS: towards detecting distant and putative novel insertion sequence elements in prokaryotic genomes

BMC Bioinformatics

Table 2 Performance of OASIS, ISEScan, ISEScan-fragments, ISsaga, and digIS on manually curated datasets

Tool	TP	FN	FP	Se	FDR (%)
Dataset ISbrowser (N = 1192)
OASIS	791	401	77	0.66	8.87
ISEScan	925	267	94	0.78	9.22
ISEScan-fragments	1077	115	248	0.90	18.71
ISsaga	1135	57	363	0.95	24.23
digIS	979	213	194	0.82	16.54
Dataset E. coli (N = 49)
OASIS	26	23	4	0.53	13.33
ISEScan	43	6	8	0.88	15.69
ISEScan-fragments	45	4	18	0.92	28.57
ISsaga	48	1	29	0.98	37.66
digIS	43	6	11	0.88	20.37

TP, FN, and FP represent the number of True Positives, False Negatives, and False Positives, respectively; Se is sensitivity; FDR is False Discovery Rate.

ISSN: 1471-2105