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Table 2 Performance of OASIS, ISEScan, ISEScan-fragments, ISsaga, and digIS on manually curated datasets

From: digIS: towards detecting distant and putative novel insertion sequence elements in prokaryotic genomes

Tool TP FN FP Se FDR (%)
Dataset ISbrowser (N = 1192)
 OASIS 791 401 77 0.66 8.87
 ISEScan 925 267 94 0.78 9.22
 ISEScan-fragments 1077 115 248 0.90 18.71
 ISsaga 1135 57 363 0.95 24.23
 digIS 979 213 194 0.82 16.54
Dataset E. coli (N = 49)
 OASIS 26 23 4 0.53 13.33
 ISEScan 43 6 8 0.88 15.69
 ISEScan-fragments 45 4 18 0.92 28.57
 ISsaga 48 1 29 0.98 37.66
 digIS 43 6 11 0.88 20.37
  1. TP, FN, and FP represent the number of True Positives, False Negatives, and False Positives, respectively; Se is sensitivity; FDR is False Discovery Rate.