Table 1 Number of k-mers and contigs after applying 2-kupl on two matched libraries
From: 2-kupl: mapping-free variant detection from DNA-seq data of matched samples
| Â | Simulated WES | TCGA-ZG-A9ND WES |
|---|---|---|
All k-mers (tumor/normal) | 465,718,268/465,610,133 | 184,233,006/177,517,776 |
Raw cs-kmers | 23599 | 393525 |
Cleaned cs-kmers | 18439 | 291350 |
Matched cs-kmers | 16914 | 240360 |
All contigs | 1245 | 106426 |
Mutations | 1026 | 9901 |
Indels | 112 | 1105 |
Unmapped | 0 | 58 |
Low confidence | 107 | 312 |