Table 3 Average performance and simulation rankings of tools at identifying prophage
From: Simulation study and comparative evaluation of viral contiguous sequence identification tools
Tool | F1 rank | Precision rank | Recall rank | Prophage F1 | Prophage precision | Prophage recall |
|---|---|---|---|---|---|---|
Vibrant | 1.15 | 1.95 | 7.45 | 0.169 | 0.146 | 0.231 |
VirSorter | 2.11 | 1.66 | 8.76 | 0.147 | 0.144 | 0.164 |
VirSorter2 | 2.70 | 3.40 | 4.70 | 0.117 | 0.0685 | 0.453 |
Phybrid | 3.95 | 4.45 | 7.13 | 0.0446 | 0.0269 | 0.252 |
Phybrid Proteins | 5.20 | 5.50 | 6.05 | 0.0188 | 0.00978 | 0.342 |
Kraken2 | 6.70 | 1.85 | 9.90 | 0.0169 | 0.172 | 0.00896 |
MetaPhinder | 6.65 | 6.85 | 2.90 | 0.0152 | 0.00776 | 0.588 |
Earth Virome | 6.85 | 7.00 | 1.60 | 0.0117 | 0.00588 | 0.728 |
VirFinder | 8.88 | 8.88 | 2.73 | 0.00725 | 0.00365 | 0.705 |
DeepVirFinder | 8.79 | 9.03 | 2.79 | 0.00647 | 0.00325 | 0.637 |