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Table 3 Average performance and simulation rankings of tools at identifying prophage

From: Simulation study and comparative evaluation of viral contiguous sequence identification tools

Tool F1 rank Precision rank Recall rank Prophage F1 Prophage precision Prophage recall
Vibrant 1.15 1.95 7.45 0.169 0.146 0.231
VirSorter 2.11 1.66 8.76 0.147 0.144 0.164
VirSorter2 2.70 3.40 4.70 0.117 0.0685 0.453
Phybrid 3.95 4.45 7.13 0.0446 0.0269 0.252
Phybrid Proteins 5.20 5.50 6.05 0.0188 0.00978 0.342
Kraken2 6.70 1.85 9.90 0.0169 0.172 0.00896
MetaPhinder 6.65 6.85 2.90 0.0152 0.00776 0.588
Earth Virome 6.85 7.00 1.60 0.0117 0.00588 0.728
VirFinder 8.88 8.88 2.73 0.00725 0.00365 0.705
DeepVirFinder 8.79 9.03 2.79 0.00647 0.00325 0.637
  1. Score of best performing tool is bolded in each column