BMC Bioinformatics

Table 5 Comparison of results of DNN algorithm and SVM algorithm

From: Predicting Ca²⁺ and Mg²⁺ ligand binding sites by deep neural network algorithm

Ligands	Algorithms	Hidden layers	Hidden neurons	Batch size	Sn (%)	Sp (%)	Acc (%)	MCC
Ca²⁺	DNN^①	2	16	32	80.1	74.6	77.4	0.563
	DNN^②	2	16	32	78.6	79.1	79.1	0.196
	SVM				67.0	77.6	77.4	0.149
Mg²⁺	DNN^①	3	32	32	80.9	82.8	81.9	0.658
	DNN^②	3	32	32	71.7	85.1	85	0.163
	SVM				77.2	78.9	78.8	0.141

DNN^① represents the results of the training dataset, DNN^② represents the results of independent testing dataset

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