Table 1 The percentage of error calling and the average Phred quality scores for observed genotypes across all 19530 SNPs in simulated datasets
Coverage depth | Percentage of error calling (%) | Mean quality score (SD) |
|---|---|---|
\(1\times\) | 70.49 | 3.37 (1.34) |
\(5\times\) | 12.59 | 15.28 (7.45) |
\(10\times\) | 3.19 | 29.53 (13.27) |