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Table 1 Data resource of our StrokeKG

From: Mining a stroke knowledge graph from literature

Data source

Types

Number of entities

Number of relations

Number of documents

PubMed

English abstracts

52,175 abstracts

CTD [60]

Western medicine databases

Chemical (19, stroke-related)

19 (stroke-related)

19 (stroke-related) 470(total)

CDR [59]

Western medicine corpus

Chemical (14, stroke-related)

Chemical (1279, total)

Disease (1188, total)

15 (stroke-related)

3116 [42] (total)

10 (stroke-related)

1500 (total)

TCMID

TCM databases

CPM (681)

–(therapeutic)681

ETCM [57]

TCM databases

Gene(10), Herbs (498), CPM (3419)

TCMSP [58]

TCM databases

Gene (63), Herbs (114)

DDI corpus [61]

Western medicine corpus

Drug-drug:14,281

 

EU-ADR [42] corpus

Western medicine corpus

Gene–disease:355

100 Medline abstracts

Plant-disease corpus [62]

TCM databases

Disease:100

Plant:1102

Plant-disease: Therapeutic (Treatment):708

Induce(Cause):486

180 abstracts

  1. Stroke MESHID:D020521, cerebrovascular ischemia/Ischemic stroke/ brain ischemia D007511, cerebral ischemia D002545, transient ischemic attack(TIA): D002546, haemorrhagic stroke/subarachnoid haemorrhage MESH:D013345, cerebrovascular accident(CVA) D002544, Subarachnoid hemorrhageMESH:D01334 D002543