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Fig. 2 | BMC Bioinformatics

Fig. 2

From: neoDL: a novel neoantigen intrinsic feature-based deep learning model identifies IDH wild-type glioblastomas with the longest survival

Fig. 2

Prognostic neoantigen intrinsic features. A The classes of neoantigen-intrinsic features including characteristics at each absolute position, dipeptide, tripeptide, Mutant position, Mutant position dipeptide&tripeptide. Red numbers are the positions of amino acids in neoantigen. B, D Volcano plots representing log2(HR) (x-axis) and − log10 (p value) (y-axis) for each feature. B All features in TCGA cohort; D valid features in Pri cohort. Horizontal dashed line represents p value of 0.05 and the vertical one is HR of 1. Colored spot represents p value lower than 0.05, with red (or blue) representing HR above (or below) 1. C, E Correlations between valid features. C TCGA cohort; E Pri cohort. Red (or blue) is positive (or negative) correlation. F Forest plot for 12 peptide features in TCGA cohort.· p value < 0.1; *p value < 0.05; **p value < 0.01

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BMC Bioinformatics

ISSN: 1471-2105

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