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Table 10 SNV results for HG003 chr21-22, PacBio

From: HELLO: improved neural network architectures and methodologies for small variant calling

  GATK DeepVariant HELLO
Precision Recall Errors Precision Recall Errors Precision Recall Errors
15x 0.996704 0.984290 1631 0.997950 0.989488 1079 0.998090 0.989535 1063
30x 0.998283 0.993698 689 0.998906 0.997105 343 0.999558 0.997070 290
60x 0.998308 0.994581 611 0.999232 0.997581 274 0.999732 0.997895 204
  1. Values in bold indicate the best operating point for each tool for the corresponding metric