BMC Bioinformatics

Table 10 SNV results for HG003 chr21-22, PacBio

From: HELLO: improved neural network architectures and methodologies for small variant calling

	GATK			DeepVariant			HELLO
	Precision	Recall	Errors	Precision	Recall	Errors	Precision	Recall	Errors
15x	0.996704	0.984290	1631	0.997950	0.989488	1079	0.998090	0.989535	1063
30x	0.998283	0.993698	689	0.998906	0.997105	343	0.999558	0.997070	290
60x	0.998308	0.994581	611	0.999232	0.997581	274	0.999732	0.997895	204

Values in bold indicate the best operating point for each tool for the corresponding metric

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