BMC Bioinformatics

Table 11 Indel results for HG003 chr21-22, Hybrid

From: HELLO: improved neural network architectures and methodologies for small variant calling

	DeepVariant			HELLO
	Precision	Recall	Errors	Precision	Recall	Errors
20 × 15x	0.986837	0.984444	401	0.991683	0.989605	261
20 × 30x	0.988237	0.989823	308	0.995143	0.993676	156
20 × 60x	0.989732	0.991568	263	0.997114	0.995929	97
30 × 15x	0.992761	0.991059	226	0.996052	0.993458	146
30 × 30x	0.992854	0.993458	192	0.996902	0.995639	104
30 × 60x	0.992244	0.993821	196	0.997958	0.996802	73
40 × 15x	0.995501	0.993312	156	0.996622	0.995202	114
40 × 30x	0.994741	0.994839	146	0.997608	0.996874	77
40 × 60x	0.992944	0.994839	172	0.997258	0.997165	78
50 × 15x	0.995572	0.993967	146	0.997323	0.995202	104
50 × 30x	0.995649	0.995348	126	0.997257	0.996656	85
50 × 60x	0.993425	0.995348	158	0.997890	0.997383	66

Values in bold indicate the best operating point for each tool for the corresponding metric

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