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Table 16 SNV results for HG001 WGS, PacBio

From: HELLO: improved neural network architectures and methodologies for small variant calling

  GATK DeepVariant HELLO
Precision Recall Errors Precision Recall Errors Precision Recall Errors
15x 0.993747 0.991098 46,067 0.995494 0.994095 31,673 0.995558 0.994285 30,905
30x 0.994958 0.998203 20,865 0.997091 0.999462 10,520 0.996894 0.999524 10,934
  1. Values in bold indicate the best operating point for each tool for the corresponding metric