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Table 16 SNV results for HG001 WGS, PacBio

From: HELLO: improved neural network architectures and methodologies for small variant calling

 

GATK

DeepVariant

HELLO

Precision

Recall

Errors

Precision

Recall

Errors

Precision

Recall

Errors

15x

0.993747

0.991098

46,067

0.995494

0.994095

31,673

0.995558

0.994285

30,905

30x

0.994958

0.998203

20,865

0.997091

0.999462

10,520

0.996894

0.999524

10,934

  1. Values in bold indicate the best operating point for each tool for the corresponding metric
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BMC Bioinformatics

ISSN: 1471-2105

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