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Table 18 SNV results for HG001 WGS, Hybrid

From: HELLO: improved neural network architectures and methodologies for small variant calling

 

DeepVariant

HELLO

Precision

Recall

Errors

Precision

Recall

Errors

20 × 15x

0.996889

0.999635

10,610

0.996529

0.999816

11,166

20 × 30x

0.996778

0.999513

11,320

0.996589

0.999858

10,853

30 × 15x

0.997409

0.999743

8691

0.996933

0.999851

9822

30 × 30x

0.997159

0.999649

9738

0.996795

0.999870

10,188

  1. Values in bold indicate the best operating point for each tool for the corresponding metric
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BMC Bioinformatics

ISSN: 1471-2105

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