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Table 18 SNV results for HG001 WGS, Hybrid

From: HELLO: improved neural network architectures and methodologies for small variant calling

  DeepVariant HELLO
Precision Recall Errors Precision Recall Errors
20 × 15x 0.996889 0.999635 10,610 0.996529 0.999816 11,166
20 × 30x 0.996778 0.999513 11,320 0.996589 0.999858 10,853
30 × 15x 0.997409 0.999743 8691 0.996933 0.999851 9822
30 × 30x 0.997159 0.999649 9738 0.996795 0.999870 10,188
  1. Values in bold indicate the best operating point for each tool for the corresponding metric