BMC Bioinformatics

Table 3 Indel results for HG003 WGS, PacBio

From: HELLO: improved neural network architectures and methodologies for small variant calling

	GATK			DeepVariant			HELLO
	Precision	Recall	Errors	Precision	Recall	Errors	Precision	Recall	Errors
15x	0.860057	0.858831	144,331	0.949591	0.947211	52,916	0.969548	0.962226	34,847
30x	0.891429	0.889284	112,742	0.980414	0.982694	19,026	0.990916	0.990159	9720
60x	0.897505	0.899685	104,621	0.991986	0.992145	8172	0.996676	0.996115	3702

Values in bold indicate the best operating point for each tool for the corresponding metric

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