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Table 1 Tracking parameters

From: LLAMA: a robust and scalable machine learning pipeline for analysis of large scale 4D microscopy data: analysis of cell ruffles and filopodia

Parameter

Name in script

Purpose

\(W_{l}\)

logSizeWeight

Weight to put on size difference when matching objects

\(d_{\max }\)

matchThreshold

Maximum distance for matching

\(Q_{p}\)

relativeNodeDistance_referenceValue

Calibrates the object merging score based on centre of mass proximity

\(Q_{c}\)

relativeNodeContact_referenceValue

Calibrates the object merging score based on contact between objects

\(W_{c}\)

relativeNodeContact_weight

Relative weight for contact measure versus distance measure

\(W_{match}\)

matchScoreWeighting

Relative weight on matching score versus merging score