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Table 2 Effects of sequence identity on the performance of CirPred

From: CirPred, the first structure modeling and linker design system for circularly permuted proteins

Sequence identitya (%)

Alignment ratiob (%)

RMSDb (Å)

Number of CP pairs

90–100

97.6

1.236

79

80–90

95.7

1.673

39

70–80

94.7

1.504

8

60–70

95.1

3.124

10

50–60

96.7

1.910

31

40–50

98.7

2.002

236

30–40

98.1

2.026

351

20–30

90.9

2.496

161

10–20

74.0

3.904

653

  1. In this experiment, for each pair of circular permutants, one protein was utilized as the template to create the model of the other protein, i.e., the target
  2. aSequence identities between the template and target proteins
  3. bAlignment ratio and RMSD values between the model and known structure of target proteins