A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data

BMC Bioinformatics

Table 1 Number of DEGs identified under three model settings with three types of test statistics

Input statistics	Models	# DEGs^a	# Cell-type Specific DEGs^b
t-test	Main	1472	3607
	Main w/ BioGrid	1605	4880
	Main w/ IntAct	1601	4875
MAST	MAST	1721	4826
	MAST w/ BioGrid	1870	8835
	MAST w/ IntAct	1867	8809
Wilcoxon	Wilcoxon	1562	3945
	Wilcoxon w/ BioGrid	1767	6526
	Wilcoxon w/ IntAct	1759	6474

ISSN: 1471-2105