Table 4 Overview of the most important sub-models of JCVI-syn3A [31] and associated milestones
From: EFMlrs: a Python package for elementary flux mode enumeration via lexicographic reverse search
Name | Reactions total | Non-essential uptake reactions | EFMs | Milestone |
|---|---|---|---|---|
sm00 | 253 | 0 | 768,990 | Smallest sub-model |
sm04 | 263 | 4 | 6,595,338 | Sub-model used for yield analysis |
sm07 | 272 | 7 | 52,761,066 | Last calculations possible with efmtool |
sm08 | 275 | 8 | 105,521,898 | Last model with further process-able output size |
sm15 | 296 | 15 | 12,051,382,513 | Last model calculated yet |
full model | 316 | 22 | unknown | Includes all non-essential exchange reactions |