From: Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph
Dataset | Alignment method | MinimalMatchingProbability | |||
---|---|---|---|---|---|
0 (no pruning) | \(10^{-8}\) | \(10^{-5}\) (default) | \(10^{-2}\) | ||
Simulated optical maps | SOMA2 | 2123 | 90 | 88 | 53 |
Real optical maps | SOMA2 | 46 | 13 | 11 | 13 |
Real optical maps | refAligner | 5953 | 1620 | 1227 | 941 |