Efficient iterative Hi-C scaffolder based on N-best neighbors

BMC Bioinformatics

Table 4 The scaffolding results in different modes

	# sequence	Largest (Mb)	NG50 (Mb)	NGA50 (Mb)	Reloc	Inv	Tran	RAM (GB)	Runtime (CPU hrs)
Ats-phc¹	93	34.17	24.11	17.83	67	10	0	2.94	1.62
Ats-phc-2s	89	32.64	24.11	18.39	72	12	0	3.76	1.72
Ats-phc-3m	53	28.84	21.98	18.81	73	18	5	2.91	1.84
Ats-phc-2m	53	28.34	21.83	18.81	71	15	5	2.91	1.73
Trs-phc	267	28.10	15.75	9.32	62	13	9	0.98	0.78
Trs-phc-2s	250	28.04	15.45	9.32	70	21	9	0.99	0.63
Trs-phc-3m	207	27.95	14.73	8.94	81	16	23	0.82	0.50
Trs-phc-2m	191	29.07	14.25	9.52	81	26	12	0.98	0.63
Cas-phc	242	184.75	44.74	28.65	106	9	12	4.54	2.43
Cas-phc-2s	223	326.93*	43.88	28.65	111	12	18	4.54	2.88
Cas-phc-3m	163	170.93	45.83	28.65	119	11	32	4.54	2.62
Cas-phc-2m	154	107.91	39.24	28.65	115	14	32	4.54	3.11

ISSN: 1471-2105