Fig. 3

Graphical summaries of enrichment results. A A geneset volcano plot (gs_volcano()), with the -log₁₀ p value depicted against the geneset Z-score, with a subset of representative affected functions, generated from the output of the gs_fuzzyclustering() function. The size of the points maps the information of the geneset size. B An enhanced visual summary for the enrichment results, displaying the contributions of the single genes to each gene set (with the directionality as log₂FC), created with enhance_table(). C A heatmap for the matrix of sample-wise geneset Z-scores for the same subset used in the other subpanels, generated with gs_scoresheat() on the output of gs_scores(). D A multidimensional scaling plot for genesets, colored by their Z-score, representing the set similarity. This can be generated with the gs_mds() function