From: HaplotypeTools: a toolkit for accurately identifying recombination and recombinant genotypes
Tool | Param | Het. (/Kb) | Read Length (nt, paired) | Hap n | Genome coverage (%) | Hap Nmax | Hap N50 | SE | SER | QAN50 | Time |
---|---|---|---|---|---|---|---|---|---|---|---|
HT | default | 100 | 100 | 95,532 | 83.2 | 2867 | 342 | 6248 | 0.0031 | 248 | 27 m41 s |
HT | default | 10 | 100 | 33,962 | 12.0 | 620 | 109 | 25 | 0.0002 | N.D | 32 m33 s |
HT | -m 2 | 10 | 100 | 34,423 | 12.1 | 620 | 109 | 32 | 0.0003 | N.D | 30 m14 s |
HT | default | 1 | 100 | 728 | 0.2 | 211 | 66 | 0 | 0.0000 | N.D | 32 m59 s |
HT | -m 2 | 1 | 100 | 875 | 0.2 | 211 | 64 | 1 | 0.0005 | N.D | 29 m42 s |
HT | default | 100 | 10,000 | 61,536 | 73.3 | 6455 | 528 | 4242 | 0.0024 | 267 | 31 m13 s |
HT | -m 2 | 100 | 10,000 | 56,825 | 80.5 | 6455 | 605 | 4185 | 0.0022 | 353 | 27 m53 s |
HT | -m 2 -r 100 kb | 100 | 10,000 | 56,903 | 80.3 | 11,694 | 612 | 4185 | 0.0022 | 350 | 23 m13 s |
HT | default | 10 | 10,000 | 5,965 | 78.6 | 9995 | 6480 | 35 | 0.0002 | 4254 | 29 m14 s |
HT | default | 1 | 10,000 | 2,492 | 57.7 | 9946 | 7774 | 0 | 0.0000 | 5888 | 27 m |
WH | default | 100 | 100 | 366 | 95.1 | 8,43,884 | 3,08,400 | 35,461 | 0.0163 | 9,91,296 | 95 m56 s |
WH | default | 10 | 100 | 2,496 | 92.7 | 74,839 | 17,864 | 1570 | 0.0070 | 19,555 | 14 m29 s |
WH | default | 1 | 100 | 6,540 | 12.1 | 3932 | 578 | 235 | 0.0192 | N.D | 43 s |
WH | default | 100 | 10,000 | 128 | 89.1 | 8,43,900 | 3,60,273 | 29,373 | 0.0144 | 9,36,966 | 23 m27 s |
WH | default | 10 | 10,000 | 130 | 90.0 | 8,74,030 | 4,00,757 | 347 | 0.0016 | 4,64,693 | 3 m11 s |
WH | default | 1 | 10,000 | 196 | 88.0 | 7,52,451 | 2,03,122 | 18 | 0.0009 | 97,221 | 24 s |