Table 3 Time required to run different partitioning strategies implemented in schist on various datasets
From: Nested Stochastic Block Models applied to the analysis of single cell data
Dataset | Cells | Edges | Leiden | PPBM | nSBM |
|---|---|---|---|---|---|
sc-mixology [47] | 860 | 9186 | 00:06 | 00:13 | 00:36 |
Quartz-seq2 [54] | 1266 | 14,603 | 00:10 | 00:19 | 00:45 |
MARS-seq [54] | 1401 | 21,756 | 00:20 | 00:34 | 02:14 |
iCELL8 [54] | 1830 | 30,636 | 00:23 | 00:40 | 03:02 |
Chromium 10x [54] | 1523 | 21,447 | 00:14 | 00:26 | 01:07 |
Hematopoiesis [52] | 2730 | 15,444 | 00:37 | 01:27 | 05:52 |
Mouse Cortex [58] | 3005 | 54,460 | 00:59 | 00:53 | 07:32 |
Endocrinogenesis [59] | 3696 | 74,670 | 01:15 | 01:29 | 10:56 |
Baron Pancreas [60] | 8569 | 294,480 | 03:51 | 07:35 | 1:33:40 |
Airzani Liver [61] | 10,368 | 354,440 | 04:13 | 09:47 | 1:42:23 |
Tabula Muris [48] | 12,434 | 265,610 | 03:07 | 10:00 | 1:23:35 |
Planaria [10] | 21,612 | 173,667 | 05:41 | 13:52 | 1:20:40 |