Skip to main content
Fig. 3 | BMC Bioinformatics

Fig. 3

From: Aird: a computation-oriented mass spectrometry data format enables a higher compression ratio and less decoding time

Fig. 3

A Metadata with the same content is stored in JSON and XML format, and Thermo QE and SCIEX TOF generate the files. File size increased by about 65% when transferred from JSON to XML for SCIEX TOF files and 1.7 times for Thermo QE files. B The principle of the ZDPD algorithm. C The compression size is compared with Zlib using each compression algorithm. The ratio increases as the accuracy improve. The ZDPD algorithm shows the best performance. D The encoding time for each algorithm. Due to SIMD support, the FastPfor algorithm is high-speed. E The decoding time for each algorithm. Decoding time is one of the most critical parameters in the computation-oriented process. Although ZDPD is not the fastest, the ZDPD algorithm's performance is the most balanced when combining the compression rate and decoding speed rate

Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us