BreakNet: detecting deletions using long reads and a deep learning approach

BMC Bioinformatics

Table 3 Performance comparison of SV caller on HG00514 and HG00733 data

			BreakNet	Sniffles	cuteSV	SVIM
HG00514	42X	Precision	0.7197	0.6772	0.4539	0.5547
		Recall	0.351	0.3137	0.3286	0.2261
		F1	0.4721	0.4290	0.3811	0.3213
	21X	Precision	0.5900	0.7358	0.4660	0.4407
		Recall	0.2624	0.2898	0.3442	0.1632
		F1	0.3633	0.4158	0.3960	0.2382
	10X	Precision	0.5552	0.5986	0.5562	0.2593
		Recall	0.3310	0.2585	0.3013	0.3003
		F1	0.4147	0.3611	0.3909	0.2783
HG00733	48X	Precision	0.7160	0.6528	0.4834	0.5166
		Recall	0.3578	0.3076	0.2932	0.2277
		F1	0.4772	0.4182	0.3650	0.3162
	24X	Precision	0.7598	0.7197	0.4250	0.5981
		Recall	0.3386	0.2832	0.3379	0.2218
		F1	0.4685	0.4065	0.3765	0.3235
	10X	Precision	0.5444	0.6440	0.5117	0.2361
		Recall	0.3364	0.2510	0.2959	0.3147
		F1	0.4158	0.3611	0.375	0.2700

ISSN: 1471-2105