Fig. 2

Data browser in GraphOmics. The Data Browser in GraphOmics facilitates linked explorations of multi-omics data. Transcripts are linked to the proteins they synthesise. Proteins and metabolites are linked by reactions they are involved in. Reactions in turn are linked to Pathways that contain them. Entries in all tables can be selected by clicking on them. Selections are used to filter entries in other linked tables. Multiple tables can be selected in turn to define a flexible filtering criteria. For example, selecting the three pathways (Selection 1) will filter for reactions, proteins, metabolites and transcripts that are connected to the selected 3 pathways. If the user subsequently selects two metabolites (Selection 2) from the filtered results, the results are further filtered to include only transcripts, proteins and reactions connected to the two selected metabolites under the 3 initially selected pathways. Each table can also be searched, sorted and filtered according to their fold changes and p values. Blue circles next to the entity name indicate measured entities