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Table 5 The results of large scale prediction

From: Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT

PTM All All (U) HQ HQ (U) HQ MA HQ MA (U)
Acetylation 7807 6113 1 1 0 0
Dephosphorylation 85965 50004 29 29 1 1
Deubiquitination 510 460 0 0 0 0
Methylation 52612 29914 20 18 4 2
Phosphorylation 1300930 381157 5654 4532 1659 537
Ubiquitination 152048 78859 4 4 0 0
Total 1599872 546507 5708 4584 1664 540
  1. All predictions indicate all the predictions from PPI-BioBERT-x10. Unique represents unique PTM-PPI triplet predictions. HQ represents high quality PTM-PPI after thresholding. HQ MA represents high quality PTM-PPI available in multiple abstracts