Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT

Table 5 The results of large scale prediction

PTM	All	All (U)	HQ	HQ (U)	HQ MA	HQ MA (U)
Acetylation	7807	6113	1	1	0	0
Dephosphorylation	85965	50004	29	29	1	1
Deubiquitination	510	460	0	0	0	0
Methylation	52612	29914	20	18	4	2
Phosphorylation	1300930	381157	5654	4532	1659	537
Ubiquitination	152048	78859	4	4	0	0
Total	1599872	546507	5708	4584	1664	540

All predictions indicate all the predictions from PPI-BioBERT-x10. Unique represents unique PTM-PPI triplet predictions. HQ represents high quality PTM-PPI after thresholding. HQ MA represents high quality PTM-PPI available in multiple abstracts

ISSN: 1471-2105