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Table 7 Include multiple abstracts filter: human evaluation on randomly sampled subset selected after thresholding on average confidence and standard deviation, with the additional condition that these predictions are present in multiple abstracts

From: Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT

  Methyl. Phosphoryl. Total
Correct 4 16 20
Incorrect—NER 0 2 2
Incorrect—Not related to PPI 0 1 1
Incorrect—relationship not described 0 7 7
Not—sure 0 4 4
Total 4 30 34
  1. We select 30 interactions per PTM, unless there are fewer predictions
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BMC Bioinformatics

ISSN: 1471-2105

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