Table 4 Comparison results of compression speed and average memory usage
From: FCLQC: fast and concurrent lossless quality scores compressor
Filename | Compression speed (MB/s) | Average memory usage (GB) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
FCLQC | LCQS | AQUa | 7-zip | Pigz | FCLQC | LCQS | AQUa | 7-zip | Pigz | |
SRR554369_1 | 135.59 | 3.09 | 3.29 | 1.02 | 17.40 | 0.0132 | 1.76 | 0.59 | 0.63 | 0.0126 |
SRR554369_2 | 139.13 | 2.98 | 3.28 | 0.97 | 14.41 | 0.0132 | 1.38 | 0.58 | 0.63 | 0.0126 |
SRR327342_1 | 305.64 | 7.12 | 6.43 | 2.87 | 50.70 | 0.0134 | 7.68 | 0.60 | 3.52 | 0.0126 |
SRR327342_2 | 301.67 | 6.37 | 8.30 | 3.45 | 77.64 | 0.0133 | 7.93 | 0.59 | 4.41 | 0.0126 |
SRR870667_1 | 341.74 | 10.36 | 9.47 | 6.12 | 36.33 | 0.0133 | 10.71 | 0.62 | 7.43 | 0.0126 |
SRR870667_2 | 316.58 | 7.73 | 8.85 | 4.21 | 43.10 | 0.0134 | 9.57 | 0.61 | 7.56 | 0.0126 |
syn_read1 | 292.03 | 8.94 | 12.17 | 6.10 | 41.98 | 0.0134 | 14.24 | 0.62 | 12.12 | 0.0126 |
syn_read2 | 275.52 | 7.95 | 11.46 | 5.58 | 38.32 | 0.0133 | 14.31 | 0.61 | 12.04 | 0.0126 |