Skip to main content
Fig. 3 | BMC Bioinformatics

Fig. 3

From: Aristotle: stratified causal discovery for omics data

Fig. 3

Overview of Aristotle. The data are shown by rectangular blocks and the methods are shown by ovals. P, R, G, and Z are defined in “Problem definition” section \(G_1\) to \(G_D\) are the subsets of G corresponding to feature groups produced in the Feature Grouping phase (see “Group Features Based on Background Knowledge” section). \(W_1\) to \(W_D\) are the feature weights produced by biclustering for each feature group. \(C_1\) to \(C_D\) are the sets of the top weighted features in each of the feature groups that the feature selection method (indicated by FS in the diagram) chooses from groups \(G_1\) to \(G_D\) given the weights \(W_1\) to \(W_D\), respectively.\(P_1\) to \(P_K\) are the sample strata produced by biclustering. Quasi-experimental design (indicated by QED in the diagram) evaluates the candidate features in the set \(C=\cup _{d=1}^{D} C_d\) for causality with respect to their corresponding sample strata and confounders Z. The outputs of QED are tuples that indicate the causal pairs of feature and stratum

Back to article page