From: M2PP: a novel computational model for predicting drug-targeted pathogenic proteins
Type | Description | Feature | Content | Information source | Influence coefficient |
---|---|---|---|---|---|
The neighborhood similarity information | Information based on the similarities between the specific disease (target) and its neighborhoods | \(\mathrm{Fea}1\) | The average similarity between the specific disease and its neighborhoods which did not have known associations with the specific target | \(\text{DDS TDA}\) | 0.58 |
 |  | \(\mathrm{Fea}2\) | The average similarity between the specific target and its neighborhoods which did not have known associations with the specific disease | \(\text{TTS TDA}\) | 0.576 |
 |  | \(\mathrm{Fea}3\) | The sum of weights for paths which connected by the nearest neighborhood of the specific target and the nearest neighborhood of the specific disease | \(\text{TTS DDS }\)\(\mathrm{TDA}\) | 0.638 |
The drug-inferred information | Information inferred by drugs based on the drug-target-disease mechanism | \(\mathrm{Fea}4\) | The maximum quotient of the average weight for the specific disease-drug paths divided by the average weight for the specific target-drug paths | \(\text{TDI DDA }{\mathrm{MMS}}\_{\mathrm{T}}\text{ MMS}\_\mathrm{D}\) | 0.671 |
The path information | Information from paths (length = 2 and length = 3) between the specific target and the specific disease | \(\mathrm{Fea}5\) | The average weight of paths from the specific target to the specific disease based on target-target-disease pattern | \(\text{TTS TDA}\) | 0.745 |
 |  | \(\mathrm{Fea}6\) | The same as above but based on target-disease-disease pattern | \({\text{DDS TDA}}\) | 0.722 |
 |  | \({\text{Fea}}7\) | The same as above but based on target-target-target-disease pattern | \({\text{TTS TDA}}\) | 0.671 |
 |  | \({\text{Fea}}8\) | The same as above but based on target-target-disease-disease pattern | \({\text{TTS DDS TDA}}\) |  0.654 |
 |  | \({\text{Fea}}9\) | The same as above but based on target-disease-disease-disease pattern | \({\text{DDS TDA}}\) | 0.593 |