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Table 1 The program versions and parameters for the benchmark

From: LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences

LaRA 2 2.0.1 lara --threads 16
 + MAFFT 7.453 mafft-xinsi --larapair
 + T-Coffee 13.41.0 t_coffee
LaRA 1.4.3 lara
LocARNA 1.9.0 mlocarna --threads=16
RNAmountAlign 1.0 RNAmountAlign
MAFFT 7.453 mafft --thread 16