Table 1 The program versions and parameters for the benchmark
From: LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences
LaRA 2 | 2.0.1 | lara --threads 16 |
+ MAFFT | 7.453 | mafft-xinsi --larapair |
+ T-Coffee | 13.41.0 | t_coffee |
LaRA | 1.4.3 | lara |
LocARNA | 1.9.0 | mlocarna --threads=16 |
RNAmountAlign | 1.0 | RNAmountAlign |
MAFFT | 7.453 | mafft --thread 16 |