LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences

BMC Bioinformatics

Table 3 SPS evaluation of the test programs on pseudoknotted structures from Rfam

RNA family id	RF01089	RF01084	RF00499	RF00165
sequence similarity	\(59.46\%\)	\(53.51\%\)	\(81.67\%\)	\(66.92\%\)
LaRA 2 + T-Coffee	0.82	0.79	0.93	0.84
LaRA 2 + MAFFT	0.86	0.75	0.94	0.94
LaRA	0.81	0.77	0.91	0.83
LocARNA	0.76	0.68	0.89	0.80
RNAmountAlign	0.63	0.67	0.93	0.83
MAFFT	0.70	0.59	0.92	0.83

ISSN: 1471-2105