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Table 3 SPS evaluation of the test programs on pseudoknotted structures from Rfam

From: LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences

RNA family id RF01089 RF01084 RF00499 RF00165
sequence similarity \(59.46\%\) \(53.51\%\) \(81.67\%\) \(66.92\%\)
LaRA 2 + T-Coffee 0.82 0.79 0.93 0.84
LaRA 2 + MAFFT 0.86 0.75 0.94 0.94
LaRA 0.81 0.77 0.91 0.83
LocARNA 0.76 0.68 0.89 0.80
RNAmountAlign 0.63 0.67 0.93 0.83
MAFFT 0.70 0.59 0.92 0.83
  1. The best values are printed in bold font