Skip to main content

Table 1 Kinetic parameters of network elements

From: Periodic synchronization of isolated network elements facilitates simulating and inferring gene regulatory networks including stochastic molecular kinetics

Element name Symbol Meaning
Hetero-dimerization \(\lambda\) Association rate of the two different monomers
\(\mu\) Inverse half life of the dimer
Homo-dimerization \(\lambda\) Association rate of the two monomers
\(\mu\) Inverse half life of the dimer
Transformation of a substrate by an enzyme \(\lambda\) Association rate of the enzyme to the substrate
\(\mu\) Dissociation rate of the substrate from the enzyme
\(\nu\) Transformation rate of substrate to product while bound to the enzyme
Gene \(\lambda\) On-rates of transcription factors
\(\mu\) Off-rates of transcription factors
\(\nu\) Product synthesis rate
\(\delta\) Product degradation rate
\(\beta_{1..N}\) Delays in production