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Table 2 Performance of functional enrichment comparison and their P values in Collins on CYC2008

From: Protein complexes detection based on node local properties and gene expression in PPI weighted networks

Methods Clusters Effective (%) < E-15 (%) E-15-E-5 (%) E-5-0.001 (%)
MCL 212 86.46 13.25 34.00 39.21
MCODE 84 89.65 15.50 59 14.75
CFinder 73 83.50 24.25 42.45 16.80
ClusterOne 106 91.85 29.75 52.47 9.63
ProRank+ 385 87.52 18.17 48.12 21.23
CLE 215 84.14 35.36 26.43 22.35
CW 164 92.79 19.24 54.31 19.24
CLP 207 94.44 8.79 60.28 25.37
CI 132 92.06 25.35 57.47 9.24
PC2P 283 93.20 43.80 32.65 16.75
DPCT 274 94.05 40.72 37.95 15.38
NRAGE-WPN 325 96.42 41.25 48.75 6.42