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Table 2 Performance of functional enrichment comparison and their P values in Collins on CYC2008

From: Protein complexes detection based on node local properties and gene expression in PPI weighted networks

Methods

Clusters

Effective (%)

< E-15 (%)

E-15-E-5 (%)

E-5-0.001 (%)

MCL

212

86.46

13.25

34.00

39.21

MCODE

84

89.65

15.50

59

14.75

CFinder

73

83.50

24.25

42.45

16.80

ClusterOne

106

91.85

29.75

52.47

9.63

ProRank+

385

87.52

18.17

48.12

21.23

CLE

215

84.14

35.36

26.43

22.35

CW

164

92.79

19.24

54.31

19.24

CLP

207

94.44

8.79

60.28

25.37

CI

132

92.06

25.35

57.47

9.24

PC2P

283

93.20

43.80

32.65

16.75

DPCT

274

94.05

40.72

37.95

15.38

NRAGE-WPN

325

96.42

41.25

48.75

6.42

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BMC Bioinformatics

ISSN: 1471-2105

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