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Table 9 Lerna results on real Nanopore Acinetobacter baumannii reads

From: Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing

k Test PPL NG50
11 221.14 39,916
13 192.64 41,358
15 221.00 40,271
17 222.93 40,452
19 222.90 40,478
21 222.76 40,491
23 223.10 40,484
25 222.96 40,477
27 222.75 40,489
31 222.69 40,541
37 222.38 40,541
45 223.01 40,516
  1. Simulated annealing here finds \(k=13\) as the best k value that also generates the highest NG50 on assembly, both of which are highlighted.
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BMC Bioinformatics

ISSN: 1471-2105

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