Skip to main content

Table 9 Lerna results on real Nanopore Acinetobacter baumannii reads

From: Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing

k

Test PPL

NG50

11

221.14

39,916

13

192.64

41,358

15

221.00

40,271

17

222.93

40,452

19

222.90

40,478

21

222.76

40,491

23

223.10

40,484

25

222.96

40,477

27

222.75

40,489

31

222.69

40,541

37

222.38

40,541

45

223.01

40,516

  1. Simulated annealing here finds \(k=13\) as the best k value that also generates the highest NG50 on assembly, both of which are highlighted.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us